PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G175600.1
Common NameB456_009G175600, LOC105768231
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 406aa    MW: 44760.3 Da    PI: 8.6048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G175600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018170193123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C++Cg+ F+  +  ++H  + H
  Gorai.009G175600.1 170 YVCQKCGEIFKKLEAIESHHLStH 193
                         9******************98877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.452170194IPR007087Zinc finger, C2H2
PROSITE patternPS000280172193IPR007087Zinc finger, C2H2
SuperFamilySSF563991.73E-16195402No hitNo description
Gene3DG3DSA:3.90.228.104.2E-8222375IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSSAWLTSLK RSVNCKPKLP DVKEPAADDS TEKNSPCLCS SGCSRSLSNL RDVIHGSKRQ  60
ADKAPRIGSP TSIASSEIIN QITHQDVFTD SKCVLEIKTQ CSGNDDGKGG STFVGTLRPG  120
TPGPGERFME PAYNSRRSRK IIAGPSLMRS SCGISSSKPR RSLDFESQRY VCQKCGEIFK  180
KLEAIESHHL STHAVTALSE GDSSKKIVEL ICQTSFLEPE NKFGEIERIL KIHNMQRTLV  240
QFEDYREMVK LKANKLSKKH PRCLADGNEL LRFYGSTVAC SLGMENTSSL CTLDQCEVCQ  300
ILRQGFFSKK EANGCWGVLT SSTSKRAMES VELDKEQHSQ RKALVVCRVI AGRVVKGLEK  360
MREMEGQSSF DSVAGKADCH SNIEELYSLS PRALLPCFIL IICKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443504.10.0PREDICTED: uncharacterized protein LOC105768231 isoform X2
TrEMBLA0A0D2QI280.0A0A0D2QI28_G
STRINGPGSC0003DMT4000559291e-141(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2510023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-118C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]